Protein Info for ABZR88_RS08110 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 PF02518: HATPase_c" amino acids 43 to 151 (109 residues), 93.6 bits, see alignment E=2.1e-30 PF00072: Response_reg" amino acids 205 to 315 (111 residues), 101.1 bits, see alignment E=8.1e-33 PF12833: HTH_18" amino acids 371 to 450 (80 residues), 71.8 bits, see alignment E=9.3e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>ABZR88_RS08110 response regulator (Mucilaginibacter yixingensis YX-36 DSM 26809)
MVSFLRNQVVTFPRNRWSVCAEIRWSISANSPDLPTEPIVIYGDREKIEIILFNLISNAI
KYTPNGGRVTVLLDDQEAVVVLKVADDGPGIPEDISGRIFDKFYRAANQGKRGGFGIGLY
LAQQFSRRHHGDLSFQTSIGEGTTFFLQLQKGTVHFKGVPINKEVTQISPLLDELKEDGQ
PHASPMATDQTGFKKEPILSDKKTILVVDDDDEIRKYIRSILESSYTVFEADNGQTGLTK
ANEKLPDLIICDVMMPGLNGIELCSMIKNDQRLSYIPMILLTASSSPESKIKGLESGADD
YIQKPFEKDVLLARIANLLQTRENLQHYFFNTVTLKSANVAISEEYRQFMEKCIDIVERH
IMDEDFSIKVLAAEIGMSHSNLYRKVKSLSGHTINSFIRYIRLRKAAELLIQSDMNVNEV
AYQTGFSSIKYFRTQFCKLFGANPSDFLKQKRPVFKKKFNVID