Protein Info for ABZR88_RS07370 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: glycoside hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 524 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF14587: Glyco_hydr_30_2" amino acids 24 to 381 (358 residues), 403.7 bits, see alignment E=5.2e-125

Best Hits

Predicted SEED Role

"putative xylanase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (524 amino acids)

>ABZR88_RS07370 glycoside hydrolase (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKRKGLPIVAIVLSILLQKAIAQTTFTINCQNQNQTIHDFGASGAWNSEVIGKYWPEEKK
NRIAELLFSPETDQAGNPKGIALSSYRFNIGAGTTEQGEASNIPDPQRRTECFLDAKGKY
DFTKQAGYQWFVRKAKDYGVPTLIGFVNSPPVFMNQNGLGFKSNKDGHANLKPEKYTEFA
DFLASVMQYFDREGLHLSCVSPVNEPQWEWTIDSKGKSSQEGSPYFNTEIAAVTRKIDSV
FTKRKIGTQIFVAENGSMDRLFQGNSWADNQIDNLWNPQSSNYIGGLKNVVGNAVSSHSY
WTESTTAKLIENRQKLFQKLQSTNKGLQFWQTEYSFLGDGYKEGSAQKRSQIDCALFLAK
VIYHDLTLANAPVWQFWTAVDGTRPTAEIRYNLICAIENKDKTDGDFYDTKSLWALGNYS
RFVRPGMIRVATDRNDGLSLEQAANKLMLSAYFDEATHKLVIVAINYDTQPQEIHLKLND
FKFKVSSLKPYITSEQDNLKAYPEVRVNDGITLKARSITTFVSR