Protein Info for ABZR88_RS07320 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1021 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 33 to 1021 (989 residues), 734.3 bits, see alignment E=3e-224 PF07715: Plug" amino acids 127 to 234 (108 residues), 45.7 bits, see alignment E=4.3e-16

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1021 amino acids)

>ABZR88_RS07320 TonB-dependent receptor (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKLTKLKYILCLPLIWLCTLSAHAQKPDEQTHVSATVVDATNHPIAGVLVYKQESKNDKG
INTNAQGKFNMDGTTSDVLVFKMTGYLTTTKSMEEIKLANNKITLTTALIGAGDDDDVYI
PFGVRKQRQITSTITTVKGDDLPQVPTSSLVNSFTGRLSGLLITPNSSQQPGYDVSNFVV
RGRSSYNNNQDPLVLVDGVERDFRSMDLGEIESISVLKDAGTLAWYGMYAANGVIYVRTK
RGSATSTKVTFDGQYGVSNPLEITNPLDSYTYASLYNEAQTNSGIAPTYSQAALTAYQTG
SDPYKYPTNNFVRDFMRKSAPTQRYVTTVSGGNSYVKFFTLLSYYNQGGLYKGGNNPLYD
ANTNFNKYNLRTNLDLKVSKNLDVSLDVGGRITNLRFPIIGTGTFLSTVYNTPPNAFPLL
NPDGSYGGTSLFQKSNPLAQMSASGVATDLSRNMMATISARQKMDGILPGLSANVYYAYD
VYGLYRSGFSQDYEVYEPNGTGGYTRYGTATIPNYSQNTFSGNVRKNELWIGLDYDHTFG
KHTINFSTRGSKAVYATFGALDMHRDGISNRLSYNFIQRYFLDLTGTVSGSENFMPGKRV
GFFPAASAGWIVSDERFMKGATFLDFLKLRGSYGLVGNDALTSLARRFSFLTTYNSGAGG
YNFGTSYTGVGGTSENPLGNPDLTWERAYKTSVGFDATLLKQMFSISADYFHEDRKNLLT
NSLVPSIIGQSLVQISAGEATYTGFEANLNFHKKIGQVDLNLFGNYTYSTSKILAINEGA
GLPDYQKQLGHPITSVMLTNSGSYVRNFLQADGIFQNQAQIDASPVQRFSRTVKPGDIKY
KDINGDGVIDNLDFVTTDYNFVPKAFFGFGTKVAVHNFDLSLFFQGVQGRTISIQNIINS
GSANNGYLNQFSVDRWTPSTPNADFPRLILSDRGNNTQNSDFWLRSGDYIRLKNAEFGYT
IPASITRKLRLSQLRVYVSGLNLLTFDHLGNLPIDPELPEAGYNSSYPYMRIYSFGLNLK
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