Protein Info for ABZR88_RS07145 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1069 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07660: STN" amino acids 46 to 96 (51 residues), 38.8 bits, see alignment 1.6e-13 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 111 to 1069 (959 residues), 675.4 bits, see alignment E=1.8e-206 PF13715: CarbopepD_reg_2" amino acids 112 to 192 (81 residues), 44.1 bits, see alignment 4.3e-15 PF13620: CarboxypepD_reg" amino acids 112 to 178 (67 residues), 37.4 bits, see alignment 6.8e-13 PF07715: Plug" amino acids 201 to 306 (106 residues), 54.2 bits, see alignment E=4.9e-18 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 282 to 312 (31 residues), 56.3 bits, see alignment (E = 2.1e-19) PF00593: TonB_dep_Rec" amino acids 448 to 846 (399 residues), 64.5 bits, see alignment E=4.6e-21

Best Hits

KEGG orthology group: None (inferred from 54% identity to shg:Sph21_4291)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1069 amino acids)

>ABZR88_RS07145 SusC/RagA family TonB-linked outer membrane protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MKLTFVLLVTAFLQISLAGRAQNVTYTAKSAPLSQVMAEIQNQTGYHFLYTDQMLADAHA
VDLNIKNQPLHEALRLCFEGQPLTYSVKNKTIILQHKEVAAPVLPALKEVKITGVVTDET
NQPLPAVTVKLVGGGAVTQTDVQGRFSIMVPDVNSVIEFSSIGFATQQLKAGGATLNVQM
RATLNSLSEVVVIGYGAQRKGDVTSAVATVKSENFVSGPVTDAGELLKGKVAGLSISNPS
GDPNAQSQILLRGTNTINGANTGVLVIIDGVPGDLLTVAPEDIAEVSVLKDGSSAAIYGV
RGSNGVIIITTKHATGNNNNRVDYSGNVSTSELTRVPKLLTAQDYRDQIAAGTRSSSYDL
GSNTNWIDAISKNHPVSTTQNLTFNGGNAQTNYLASFNYRFLNGVFQQSNHKQVTGRVDI
NHTMLDGKLKFNFGLTQTNFSDIPFSTYDYRQALIMNPTAPVIEPNGSYYQEPTNFQYQN
PVSDLYNSSQPQNSFRNKYNTTVTVLPVEGLRISATGSYTKSGYQNLYYANTQNISTLRD
NQNGVANIATGQTVERFLNASAEYTRGFGEHHVSLLAGYEYQDYDNFNSYIANHNFPTDV
FGYNQIQLGAAQKDGQDVISSGRTQTNLISYFARATYNYMDKYLLLASLRIDGASQLYGA
SEPYGKFPSIQAGWRISKENFMKDQHLFDDLKLRAGYGVTGNQPSAGFLAVGLLKYDTYI
LYNGQWIQTLVPAQNANPSLRWEEKHETNLGLDFSLLKGLVTGSVDVYDRKISGLLYSYN
VPSPPNLYPTTMANVGTMENKGLEAAVNIRPIKTRNFSWTSTFTFSTNSNKLISLSNDLY
QATVPYFTTGGTQDPIQTFTNIVQVGHNIGDFYGFKVTGVSPDGYWIYQEPDGTSVPYNK
FNHSFNDKQVIGNGLPKYYGGWNNSISYKNWDFSVTMRGAFDYQVLNFQRMYYENPGIIN
YNRLKSAYDKVFGTAVLNKNVPLEFNSYYVENGDFWKVDNINLGYTFRNVKSKYIHNPRV
AFSTLNTFIITGYKGIDPEVDRGGLAPGNDPRDTYPSQRTFTLSFSASF