Protein Info for ABZR88_RS07075 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: HRDC domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 transmembrane" amino acids 45 to 66 (22 residues), see Phobius details PF13604: AAA_30" amino acids 8 to 212 (205 residues), 51.1 bits, see alignment E=3.7e-17 PF05970: PIF1" amino acids 13 to 190 (178 residues), 98 bits, see alignment E=1.5e-31 PF13245: AAA_19" amino acids 14 to 146 (133 residues), 44.4 bits, see alignment E=4.7e-15 PF13401: AAA_22" amino acids 16 to 140 (125 residues), 30.9 bits, see alignment E=7.7e-11 PF00570: HRDC" amino acids 579 to 645 (67 residues), 62.8 bits, see alignment E=5.8e-21

Best Hits

Predicted SEED Role

"DNA repair and recombination protein, putative helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>ABZR88_RS07075 HRDC domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MDNPLLELAQAYADTTNTLIFLTGKAGTGKTTFLRAVRQNSKKKLAIVAPTGVAAINAGG
MTIHSLFQLPFGPLLPETPDRPEVSYNAEKRELLQSLELLIIDEISMVRPDVLDQIDLIL
RNIRGNTHAFGGIQLLLIGDLAQLSPIVREEEWGLLRPYYATPYFFSSLVLQRTPYVRIE
LDKVYRQTDQAFVQILNEMREQQLSADGLRLLNERYIKDFVPDQADPYITLTTHNRIAQQ
LNAERLEALQGTDTEYRATIRGEFPADAYPTEISLKLKVGAQVMFVKNDSSPEKRYYNGK
IGTVTRLEADRVHVATPDGRDIAVEALEWTNVKYKLDGDTIGEQNAGSFAQIPLKLAWAI
TIHKSQGLTFDRAIIDVSEAFTHGQAYVALSRCRSLEGLVLRNPVSAHNVISDPAVTRFN
REAELKKPDQETLRQHQEAYRLFLLSELFNFTGLRERIKRFNQLLPGLEGEVFTVAEKLS
RQLATYPDDRVQKAAIYFREKLETAATSLHQQLTAVVGSSKELAGKADELLRWIMTRLKL
LEGFSSQSFTTESYLDLIRGQKAILSHSYLKTLNAKPNEELYERLLQWRDQTAQSEQVLS
SMLFSDQTLAAVAAKLPTTLKAISGVKGIGPEKANRYGAAMLTLVRAYEQEISGAVDQAS
LF