Protein Info for ABZR88_RS03365 in Mucilaginibacter yixingensis YX-36 DSM 26809
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K05833, putative ABC transport system ATP-binding protein (inferred from 54% identity to shg:Sph21_3280)Predicted SEED Role
"Methionine ABC transporter ATP-binding protein" in subsystem Methionine Biosynthesis or Methionine Degradation
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (249 amino acids)
>ABZR88_RS03365 ABC transporter ATP-binding protein (Mucilaginibacter yixingensis YX-36 DSM 26809) MIDIQSLYKTFNKGLPNEVQAINGINLNIANGDYLVIVGSNGSGKSTLLNLIAGSILPSS GSVSIDRNDVSRLHDYQRSRWVARVFQNPLSGTAPDLSILDNFRLAALRTKRKGFSIGIN DGFKSKVKEQIARLGMGLENKTGQLMGTLSGGQRQALTLLMSVMDDCKILLLDEPSAALD PRSADLVMQTADQLVKDYSLTGILITHNLKDAFTYGNRIIQMAEGKILHDLSSEKKTALT QNELFSWFS