Protein Info for ABZR88_RS03290 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: VWA domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details PF07584: BatA" amino acids 1 to 76 (76 residues), 30.4 bits, see alignment E=6.5e-11 PF00092: VWA" amino acids 91 to 230 (140 residues), 72.3 bits, see alignment E=8.8e-24 PF13519: VWA_2" amino acids 92 to 201 (110 residues), 67.5 bits, see alignment E=2.3e-22

Best Hits

KEGG orthology group: K07114, uncharacterized protein (inferred from 63% identity to phe:Phep_1482)

Predicted SEED Role

"BatB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (348 amino acids)

>ABZR88_RS03290 VWA domain-containing protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MLRFAHIEFLWGLAGVPLLLLLFIWVTRWKQKALTRLGDKQVVHKMMPEVSFSRPWLKVI
LWLSAFTFLIIGLADPQLGSHTEDVKRKGADLMVLLDVSNSMLAEDIAPSRLENAKRALT
QLVDNLHDNDRIGLIVFAGQAYVQMPVTTDYSAAKLFLGTINTNMVPTQGTAIGDAINLG
MKSFDFKNGTGKAMIIITDGENHEDDAVAAAKAAHDSNVMINVVGIGSQEGAPIPVVLPN
GQRQGYHLDENGKQVITKMNEEACKEIAAAGGGVYTRATNANSGLGVVMTQIGKVQRKMY
GSKSFKDFEDRFQYFIGLALVLLAVEFFISARRNMRLSRIKLFEVENK