Protein Info for ABZR88_RS02840 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 896 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF19501: PcRGLX_1st" amino acids 29 to 100 (72 residues), 93.2 bits, see alignment E=1.1e-30 PF21345: PcRGLX_2nd" amino acids 120 to 465 (346 residues), 410.2 bits, see alignment E=1.1e-126 PF21346: PcRGLX_3rd" amino acids 474 to 886 (413 residues), 520.6 bits, see alignment E=5.9e-160

Best Hits

Predicted SEED Role

"FIG01125695: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (896 amino acids)

>ABZR88_RS02840 hypothetical protein (Mucilaginibacter yixingensis YX-36 DSM 26809)
MNIFRSLKLSLGTVACLATLGSSAQQINIPLKWLNGTPTKTTGVSWGIPWPQGQVKKSAQ
FALAKADGSTQAVQSWPLAYWPDGSIKWTGFAAVADSGAHDLSIKMIGTKDKTAANATLQ
ITDDAQGVRINTGAMQCVLAKTGNTVMPSLVINGKSIATDGQLTCILQDKADAAADVESS
PVRQKYLGEVSSVKVEQSGPLRAVVKVEGKFKAANGSRSLIPFILRFYFYAGVSNIRLIH
TIVYDGDQFKDYIKGMGLTFNVPFREELQNRHVRFSGEDDGVWAEPVQPLNGRRPSPYLF
DQAQGKRLPNVASVPTQKGLFDNMASWNDYKLTQNSADGFNIQKRTNGASSWLDVIGGKR
ATGLAFAGDASGGLALCLKNFWQSYPAALEINGTRTKQAKMSVWMWSPYADAMDLRHYDT
TAHDLNVTYEDVQPGFSTPYGVGRTSEVMICPYAAMPTNQQLANDAAATNNTQLLVTTPQ
YLHQVGALGLWSLPDRSTKGKAWIEDQLDKALAFYQQEIDKREWYGFWNYGDVMHSYDAS
RHTWKYDIGGFAWDNTELSTDLWLWYSYLRSGRADIFKMAEAMTRHTSEVDCYHLGPMMG
LGSRHNVNHWGDGSKEVRESQAILRRCFYYLTTDERTGDIMHDAAMHADSGLAHVDPLRE
ILPKSKYPTHARFGPDWVGLVGNYMTEWERTGDVKWKNKILVGLNDFAKMPHGFYSGKGK
DAGMGYDPATGHFYQLDQGDIGSLHLATLMGGMEMAYELTPILNNKDWNRLYLQYCSLYG
APLEDVQAAFGKEVKEPLGDPNGDYARQPGYAYVMTKDTKFAQRAWDYFLPKQPGRFGGG
ARFDTQILKGPMVVKPLQEIRNVSTNSTSQWCLNAIELLQMAGDQIPEHNFAWDGK