Protein Info for ABZR88_RS02815 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 337 to 356 (20 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 391 to 415 (25 residues), see Phobius details amino acids 446 to 464 (19 residues), see Phobius details amino acids 476 to 501 (26 residues), see Phobius details amino acids 534 to 553 (20 residues), see Phobius details amino acids 869 to 889 (21 residues), see Phobius details amino acids 896 to 916 (21 residues), see Phobius details amino acids 921 to 921 (1 residues), see Phobius details amino acids 923 to 945 (23 residues), see Phobius details amino acids 967 to 986 (20 residues), see Phobius details amino acids 998 to 1025 (28 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 5 to 1033 (1029 residues), 1002.7 bits, see alignment E=9.3e-306 PF00873: ACR_tran" amino acids 8 to 1024 (1017 residues), 872 bits, see alignment E=5.5e-266 PF03176: MMPL" amino acids 797 to 1027 (231 residues), 27.7 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 64% identity to sli:Slin_2549)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1044 amino acids)

>ABZR88_RS02815 efflux RND transporter permease subunit (Mucilaginibacter yixingensis YX-36 DSM 26809)
MDKLIKNIIHFSLRHRYFVFFLTGIMVLLGIWSYSNTPIETFPDVTNTQIIIIAQWPGRS
AEEVEKFITIPIETVLNSVQKKSNLRTTSAFGLSYTRIIFDDDVDDAFARQQVLSRLANA
DLPDGVKPEIEPPYGPTGEIYRYTLKSKTASLHELTAIQDWVLDRQFKAVPGVADVNSFG
GEEKSYEVSVNPALLRKYELTSLDVFNALNRSNINVGGDVIEKNDQAYVVRGIGVINNVD
ELKNVIIKNVNNVPILAKDVADVHEAGLPRLGQVSRDKKKDVIEGIIVMRKGENPAEVLD
RVRAKVKDLNDNILPKDVKIDTFYDRTNLMDFCTETVIHNLCEGIILVTVIVFLFMADWR
TTVTVAIIIPLSLLFAFICMRIKGMSANLLSMGAVDFGIIIDGAVVMVEGIFVALDHRAR
EVGMEKFNKLAKLGLFKNVGTEMGKAIFFSKLIILTCLMPIFAFQKVEGKMFSPLAYTLG
FALLGALIFTLTLVPALSSILLRKNVKEKHNPVVIFFENGVRRMFNFTYHNQKLSLLVAV
GFMALTFMSAKLLGTEFLPDLNEGALWVEAELPMSVSLPEAESINQKMMQILDKFPEVKQ
TLAQVGRTNDGTDPKGFFDVQIQVDLKNKKDWRKGLTEDELIDQMDQQLRKIPGAVFNYS
QPIRDNVEEAVAGVNAALAVKIFGPDFETLDKKADAVMKVLKGVKGVDDLGVLRNLGQPE
FRIELDQRKMALYGVSTADANAVIEMAIGGKAATELYEGERRFDVRIRYQKDFRDTQDKI
ENLMVPTLNGSKIAIKEIADIRTLTGPAFIYRDNNSRYIAVKFSVRGRDLGSTIAEAQSK
VNKAVKLDQGYSFAWAGEFENQTRASNTLAHVVPICLLVIFLILFITFGNVKDATLVIMN
VPFALIGGILALHITGINFSISAGIGFIALFGVCIQNGVILISVFRKNLEEHMPLDKAIL
DGVVSRVRPVVMTALMAAIGLMPAAISTGIGSETQKPLAIVVIGGLVTSTILTLLILPVI
YAMVYKLIHRRENRKLLKKIGAVS