Protein Info for ABZR88_RS00545 in Mucilaginibacter yixingensis YX-36 DSM 26809

Annotation: 50S ribosomal protein L15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 TIGR01071: ribosomal protein uL15" amino acids 2 to 146 (145 residues), 166.3 bits, see alignment E=1.9e-53 PF00828: Ribosomal_L27A" amino acids 27 to 146 (120 residues), 131.4 bits, see alignment E=1.5e-42

Best Hits

Swiss-Prot: 68% identical to RL15_PARD8: 50S ribosomal protein L15 (rplO) from Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152)

KEGG orthology group: K02876, large subunit ribosomal protein L15 (inferred from 84% identity to psn:Pedsa_2129)

Predicted SEED Role

"LSU ribosomal protein L15p (L27Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>ABZR88_RS00545 50S ribosomal protein L15 (Mucilaginibacter yixingensis YX-36 DSM 26809)
MNLSNLKPAEGSTKNRKRIGRGTGSGRGGTSTRGHKGAGSRSGNSTKVGFEGGQMPLQRR
VPKVGFKNPNRVEYVSINLDALQQLAENHSVSAIDFDVLKEHGLASRNDLVKILGRGELK
AKLTVKAHAFSATAQKAIEAAGGSIEKL