Protein Info for ABIE41_RS20735 in Bosea sp. OAE506

Annotation: DUF2309 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 PF10070: DabA" amino acids 19 to 765 (747 residues), 828.3 bits, see alignment E=3.6e-253

Best Hits

Swiss-Prot: 58% identical to Y3405_RHOPT: UPF0753 protein Rpal_3405 (Rpal_3405) from Rhodopseudomonas palustris (strain TIE-1)

KEGG orthology group: K09822, hypothetical protein (inferred from 58% identity to rpt:Rpal_3405)

Predicted SEED Role

"Hypothetical transmembrane protein coupled to NADH-ubiquinone oxidoreductase chain 5 homolog" in subsystem CO2 uptake, carboxysome or Respiratory Complex I

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (800 amino acids)

>ABIE41_RS20735 DUF2309 domain-containing protein (Bosea sp. OAE506)
MNAQPGQDALQAALMAQADRAARIIPPLWPLSASVAVNPFLGLAGETLPGAAARLGRAGG
IPVTMPRSFYRERWRAGEITPADLAAAVADDPDAPGLATVEAALAEDPAPVAAIPTVAAL
CADATGIDWPGFIADRIGAWASGHFDLGQAMWPKTIATGAYESWRAFATQDLSPEIAGLK
GFCLRISREPLAAPAAIRRASLALGLPQAAAESYFTTLLTGLGGWAQYARQLHWQAERDG
GTDQTITDLLAIALAFEAALQAQFGRQIAEPWRQAIDAHAAPVEPSTDQIIDALLQEAYD
RAAQRRFFAAWRPAVSQKEPAARPSVQAAFCIDVRSEIIRRTLESLDPGTETLGFAGFFG
IGVSHRRLGSVGGEARLPVLLKPGVSSFTCDVPGEAAEEKQRIGARARRAWGRFKRAAVS
SFAFVEASGPLYLWKLFHDSVTADRRPDGDRAAPRLDASLTAAQRIEMAATILRAMSLTS
RFARLVLLAGHGARLVNNAHASALQCGACGGFPGDVNARLLAGLLNDDEVRIGLAAQGID
VPADTRFVAGLHDTVSDEITLFDRAALSPSHAADLARLDSLLASAGRLARTERALRLPGA
AGEGDVARRGQDWAQVRPEWGLAGCKAFIAAPRRHTAGASLAGRAFLHSYDWRADSGFKV
LELILTAPVVVASWISLQYYGSAVAPAAFGAGNKLLHNVVGGIGVFEGNGGVLRGGLPWQ
SVHDGERLMHEPLRLSVVIAAPREAILGVLEKHPNLRALFDQGWLALFAMDDAGQVAARY
HARDGWADLDPAPGPAVLAA