Protein Info for ABIE41_RS20730 in Bosea sp. OAE506

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 402 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 35 to 366 (332 residues), 195.8 bits, see alignment E=2.6e-61 PF13433: Peripla_BP_5" amino acids 36 to 350 (315 residues), 71.5 bits, see alignment E=1.1e-23 PF01094: ANF_receptor" amino acids 56 to 370 (315 residues), 69.2 bits, see alignment E=5.3e-23

Best Hits

KEGG orthology group: None (inferred from 66% identity to axy:AXYL_06000)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (402 amino acids)

>ABIE41_RS20730 ABC transporter substrate-binding protein (Bosea sp. OAE506)
MIKLSPTRRGLMLGAAGAIAAPYVVRDAVAQGKAVNVGVILPLSGANAQFGINSRNGIEL
VADEINAAGGIKALGGARINLVIADSTSTPTTAANVAQRLLTQNDVVAILGAFASSLTIA
ISEVTERRGVPLLTMSFSDQITGRGFENIFQVVAKASVIGKAQFDGTAAIAASAGQKLER
IAIMYEDTAYGTSQAGGLREGAKAAGVQIVMDDAYPLGITDVTPLINKLRASGAQAVFPV
SYLNDSLQIIRAMRQQRITIPAIGGAAGYVIPDFEKGLGEFAEGVLSISPANYDLAPELT
ERFRKRFGYFMVHEALEHAVCMDVLAQAMEKAKSAKPEDLRKALQGARFEGGWNKAMTGG
AVQFDKTGLNTLSVPVMVQWRNKELVTVWPADVAKAKAVWGG