Protein Info for ABIE41_RS18980 in Bosea sp. OAE506

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 215 to 225 (11 residues), see Phobius details PF00126: HTH_1" amino acids 2 to 56 (55 residues), 46.3 bits, see alignment E=3.3e-16 PF03466: LysR_substrate" amino acids 84 to 283 (200 residues), 80.3 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: None (inferred from 57% identity to sme:SMa0347)

Predicted SEED Role

"putative LysR-type regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>ABIE41_RS18980 LysR family transcriptional regulator (Bosea sp. OAE506)
MVLDALLDEAHVSRAAERIGLSQPAMSSALERCRHLFADRLLERGAGGMVLTPKAQALAA
PVKEVLAGMAALLDRSEPELATIRRTVRVVMADLPAVATGPALQRRLAQTAPSITVAIMP
WHGAAAALDGLGRGSIDLAVSVFPKVDPDFTRRELLQERYRVAMRRDHPAADTFDLDRWL
AYPHVLVSGRGDTHGPLDEALARINRVRQVGMVVPSFIMALPLLAESDMIGLLPSRCLPE
RVRSEIVAFEPPIAVEGFALHSAWHKRRAADPAVQHVARLIEELVSALPG