Protein Info for ABIE41_RS18315 in Bosea sp. OAE506

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00005: ABC_tran" amino acids 21 to 163 (143 residues), 132.5 bits, see alignment E=1.7e-42 PF08402: TOBE_2" amino acids 277 to 348 (72 residues), 34.1 bits, see alignment E=2.4e-12

Best Hits

Swiss-Prot: 47% identical to POTA_RUBXD: Spermidine/putrescine import ATP-binding protein PotA (potA) from Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)

KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 76% identity to azc:AZC_1991)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>ABIE41_RS18315 ABC transporter ATP-binding protein (Bosea sp. OAE506)
MSQGFLSVAGAAKTFGAATVLDGVDLSMARGEFVSLLGPSGCGKTTLLRIVAGLMRPDQG
RVALDGQDITRLPPHRRDVSVVFQSYALFPHLSVAENVAFGLKARGAPSAEIAPAVARFL
DLVQMGAYADRSIKALSGGQQQRVAVARALVVGPKLLLLDEPFSALDRKLRETMQIDLKR
LLREVGTTAIFVTHDQDEALTMSDRIAVMHRGRIEQLDTPAAIYAKPATPFALGFVGLST
RLPGTVTDSTDGIVTIATQAGPLRGPGNFLPGSPVLLGVRPERIALDHGGANRIEAPLAD
AAFQGARVQLHFQAPPDGQILVETPALPAAAGPGTSLKMSWAIDDTLVYPAPAEAA