Protein Info for ABIE41_RS15450 in Bosea sp. OAE506

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1052 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 367 to 389 (23 residues), see Phobius details amino acids 395 to 418 (24 residues), see Phobius details amino acids 438 to 460 (23 residues), see Phobius details amino acids 467 to 488 (22 residues), see Phobius details amino acids 531 to 553 (23 residues), see Phobius details amino acids 867 to 886 (20 residues), see Phobius details amino acids 894 to 917 (24 residues), see Phobius details amino acids 923 to 947 (25 residues), see Phobius details amino acids 973 to 995 (23 residues), see Phobius details amino acids 1001 to 1027 (27 residues), see Phobius details TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 2 to 1032 (1031 residues), 1082.8 bits, see alignment E=0 PF00873: ACR_tran" amino acids 2 to 1027 (1026 residues), 1003.5 bits, see alignment E=5.3e-306

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 61% identity to hdn:Hden_2113)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1052 amino acids)

>ABIE41_RS15450 efflux RND transporter permease subunit (Bosea sp. OAE506)
MMAKFFIERPVLANVIAVLIVILGLVALLRLPVAQYPNVVPPTVQVTARYPGASAAVIAR
EVALPIEQKVNGVEDMIYMSSTSTSDGLYTLTVTFAIGTDADKAQILVQNRVAAALPQLP
SVVQTQGVQTNKRSTAILQIVALTSDRAGHDSLFLSNFATLNLFDEIARLPGIGAVNVFG
AGQYAMRIWLDPQKMQLRGLLPADIVNAVNQQNRSVASGQLGMAPTAGDQAFQTTLLTPG
RLDEVEAFEAIIVRADGNRITRLRDIARVELGAQAYGQDFRLNGQPSAGLAIFQLPEANA
LEVAKLVQTRMTALSARFPEGMGWSVPFDTTRFVDASLGAVYKTLVEAAVLVLLVILIFL
QDWRATLVPATTVPVTIIGAFAAMAAPGFTVNISTLLAVVLAIGIVVDDAIVVVEGAAHH
MERGLSPHDATVRAMEELIGPIMGITLVLMAVFLPAAFLPGLSGEIYQQFALVIAATALI
SAVNAVTLKPAQCALWLRAPKPVTQRAWIYRMFERGYGACERAYVGLVRRLVARSAAVFT
VTLLLVGASVYALSRIPTSFLPVEDQGYMLVSVQLPDGASLARTTAALDEVTKRARAVPG
VDKVIAIAGLSALNDNASLANAGVAYVMLTDWKARRKGEDLLGLYGALNRAMADLEDGAA
LVLPPPPIQGIGNASGFTMKVELRDGSFDYAKLQRLADAIAERARAQNRFQAARNTFSAQ
APQVELAIDRTKAEALGISFGAATDALGAYVGSAYVGQFSKGGRVFQVFVQAQAEARMEA
EGLRTLKLRAKSGEMVPLGAIADIRPGIGPSLISFHNLYPAATLIGAPNRDVSSGEGLDI
LAEIARQTLPAGTGYEWSALSYQEKELAGQVFVVYALSLLLVYLVLAGQYESWIAPLGII
LSVPLALLGTAGAMLALGLSSNLYTQIGLVLLIALSAKNAILIVGFARDLHLKQAVPLAE
AAVEAARLRLRPIVMTSLAFILGLVPLVLASGAGANAQKSIGFATLTGMIGSTLLTVVVV
PSVFVVLQRLETRLRPKPSLRPAAVTGGAGHG