Protein Info for ABIE41_RS12025 in Bosea sp. OAE506

Annotation: secondary thiamine-phosphate synthase enzyme YjbQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 TIGR00149: secondary thiamine-phosphate synthase enzyme" amino acids 5 to 138 (134 residues), 136.7 bits, see alignment E=2e-44 PF01894: UPF0047" amino acids 19 to 138 (120 residues), 133.9 bits, see alignment E=1.5e-43

Best Hits

KEGG orthology group: None (inferred from 76% identity to rle:RL3385)

Predicted SEED Role

"Uncharacterized protein sll1880 (YjbQ family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (140 amino acids)

>ABIE41_RS12025 secondary thiamine-phosphate synthase enzyme YjbQ (Bosea sp. OAE506)
MAVQTLLAIATRGPGLYEFTREVAAFVAGAGIETGLLTLFVRHTSCSLLIQENADPDVRV
DLEAFFRRLVPSADDPAMDYLVHRAEGPDDMPAHIKAALTPVSLSIPVMGGRLALGTWQG
IYLFEHRARPHRREVVLHLA