Protein Info for ABIE41_RS08840 in Bosea sp. OAE506

Annotation: carbohydrate ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 272 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 131 to 156 (26 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 87 to 258 (172 residues), 79.3 bits, see alignment E=1.6e-26

Best Hits

Swiss-Prot: 32% identical to Y4OR_SINFN: Probable ABC transporter permease protein y4oR (NGR_a02180) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 64% identity to mci:Mesci_4023)

MetaCyc: 35% identical to polyol ABC-type transporter permease component MtlG (Pseudomonas fluorescens)
7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]; 7.5.2.M2 [EC: 7.5.2.M2]

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalG" in subsystem Maltose and Maltodextrin Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.M2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (272 amino acids)

>ABIE41_RS08840 carbohydrate ABC transporter permease (Bosea sp. OAE506)
MTRLAKKLGFYASVFVLVSPAVLVFLWMISLSFKNELDNTAFPPVFIPDPPTLKNYVDVF
AQNNFALYLWNSILVTGGAVLIGLAVGVPAGYGIARGKATKFAILILVARMTPALSYLIP
LFLLFQMTGLVGTITALVITHLVITIPIIVWIMIGYFENIPMELEDAARIDGASSWQAFR
HVALPLAMPGVTVGGILAFIFSWNNFIFSVVLGGKNSRTLPSAVYNSLTFEQISWGPLAA
AALLVTLPVLLVTVLAQRQIVAGLSAGGLKDG