Protein Info for ABIE41_RS08105 in Bosea sp. OAE506

Annotation: HlyD family type I secretion periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details TIGR01843: type I secretion membrane fusion protein, HlyD family" amino acids 17 to 438 (422 residues), 363.7 bits, see alignment E=7.1e-113 PF13533: Biotin_lipoyl_2" amino acids 60 to 95 (36 residues), 28.9 bits, see alignment 1.6e-10 PF13437: HlyD_3" amino acids 290 to 395 (106 residues), 59.1 bits, see alignment E=1.3e-19

Best Hits

KEGG orthology group: K02022, (no description) (inferred from 55% identity to mpo:Mpop_2862)

Predicted SEED Role

"HlyD family secretion protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (438 amino acids)

>ABIE41_RS08105 HlyD family type I secretion periplasmic adaptor subunit (Bosea sp. OAE506)
MKPDAPRLPQVQASLARLNRVAVISVAIFLFGIGGWAWAVNLSGAVLATGQVVVEGSLRR
VQHPSGGVVGQILVTEGQTVASGDVLLRLDDTLTRANLGIVRSQIDELAAREARLLAERD
GQAAITFPTDLLARRTDATVERALAGEAKLIDARTRSREGQKAQLRERAAQFAEESQGIS
VQIATKEKEELLIAEELRGVAQLFRQNLTSMQRYTALQRDQTRVAGERGQLVAERARVRG
KVAEVELQILQLDQDMRTQVLGDLRDTQGKLAELRERRVAAEDQLARVEIRAPISGLVHQ
LTVFTVGGVVAAGETLMSLVPHDEALVADVRVLPTDIDQLVPGQDAVVRVLAGNQRTTPD
LRGRLVRIGADLTREPQTGLSYFTARIALPESEIRQLQDLKLVPGMPIQAFIKTQDRSAL
DYLLRPLVEQAGRAFRER