Protein Info for ABIE41_RS05395 in Bosea sp. OAE506

Annotation: flagellin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 PF00669: Flagellin_N" amino acids 6 to 135 (130 residues), 100.3 bits, see alignment E=1e-32 PF00700: Flagellin_C" amino acids 330 to 415 (86 residues), 72.4 bits, see alignment E=3.1e-24

Best Hits

Predicted SEED Role

"Flagellin protein FlaA" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>ABIE41_RS05395 flagellin (Bosea sp. OAE506)
MTSLLTNTSAMTALQTLTQTNKNLAQSQNRIATGQRVSTASDNAAYWSIATTMRSDNKAL
GAVQDALGLGAATIDTMYTGLNGTVEVVSEIKAKLVAARTPGVDRDKIQSEIKELQSQLK
NTADSAVFNGENWISVDSTASSYNATKSVVSSFSRAGGQVQVDTVTVDLNAIKLYDANLD
TAYAAQTFPTVTTAARDPLLDVGGNITVTVGAAPALNIAVAAGTSLKDIAKEINKLGVEG
LSVGINAAGDALAFKSRNDANVVIDASVAGLGAAVTLTALATPVDSNKGILDKTYDAYTG
TAWETFSVADIDIAKLTDNATDLAKLETYISAVDDALGTITDAATNLGAIKNRIGLQQDF
VKALKDSLDRGIGQLVDADMNAESTRLQALQTQQQLGIQALSIANSGSQSILSLFRG