Protein Info for ABIE41_RS05245 in Bosea sp. OAE506

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 44 to 69 (26 residues), see Phobius details amino acids 120 to 139 (20 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 199 to 223 (25 residues), see Phobius details amino acids 244 to 269 (26 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 306 to 330 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 129 to 323 (195 residues), 61.9 bits, see alignment E=3.5e-21

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 80% identity to bra:BRADO4395)

Predicted SEED Role

"probable sugar ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>ABIE41_RS05245 sugar ABC transporter permease (Bosea sp. OAE506)
MASAEPAAPRGAARLFAAPLSLLMRLVDWPMSALQRLIGERRMAYVFLLPNIAFFGLFVF
LPLIINVVFSVTGGTELFPSQRPFVGGEQYAYLFDCGSFLDPNSCREDHFWRGVANTARF
TVFQVTAMVLFSLVTAVVLNMRIRARGFFRAVYFFPVLLSPVVVALTWKWILQRDGLLNA
GITSLGGERILFLVDPSWAMFWIVFVSVWAHMGFYTLILLAGLQAIPADLYEAAEMDATP
RWRVFWRITLPLLWPNMIVVIVLALIKGVQTFDEVFVLTGGGPGTATLMVVHYIYETAFS
NQVQNFGLAAAASVVLGVVLFALTLAQLAAGSRKGAA