Protein Info for ABIE41_RS04905 in Bosea sp. OAE506

Annotation: TPM domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details PF04536: TPM_phosphatase" amino acids 99 to 178 (80 residues), 36.4 bits, see alignment E=2.6e-13

Best Hits

KEGG orthology group: K08988, putative membrane protein (inferred from 37% identity to sno:Snov_2387)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>ABIE41_RS04905 TPM domain-containing protein (Bosea sp. OAE506)
MNEQDRQTIAEAVRQAESETSGEIVVMIDRAAASYRTVPVVLALTLSLFVPWPLLALTAT
SAPRIFLIQLICAVLLLATLLWYGRGGRFVPGFVKRRRAHDVALREFAARGLSHTRQRSG
VLLYVAIQERYAEIIADTGIDGRVDQAVWDGIVEAVVAAGREDRLREGIVTAVRAIGAVL
ANHAPRSPDDVDELPNNVVIL