Protein Info for ABIE41_RS04035 in Bosea sp. OAE506

Annotation: recombination mediator RecR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 TIGR00615: recombination protein RecR" amino acids 8 to 198 (191 residues), 198.7 bits, see alignment E=3.4e-63 PF21176: RecR_HhH" amino acids 10 to 53 (44 residues), 40 bits, see alignment 5.7e-14 PF02132: RecR_ZnF" amino acids 58 to 77 (20 residues), 23.1 bits, see alignment (E = 1e-08) PF13662: Toprim_4" amino acids 84 to 174 (91 residues), 76 bits, see alignment E=4.6e-25 PF21175: RecR_C" amino acids 176 to 198 (23 residues), 41.7 bits, see alignment (E = 1.3e-14)

Best Hits

Swiss-Prot: 78% identical to RECR_METNO: Recombination protein RecR (recR) from Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060)

KEGG orthology group: K06187, recombination protein RecR (inferred from 78% identity to mno:Mnod_4750)

MetaCyc: 40% identical to recombination mediator protein RecR (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"Recombination protein RecR" in subsystem DNA-replication or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>ABIE41_RS04035 recombination mediator RecR (Bosea sp. OAE506)
MSRAIAGPEIERLIQLLAKLPGLGPRSARRAALHLVKKREALLGPLAEAMAVAREKIVVC
STCGNVDTSDPCGLCRDPRREDGLIVVVADISDLWALERSGAVPGRYHVLGGVLSALDGV
RPEHLSLDALVARASDPAVKEIILALSATVDGQTTAHFITDLLAHLPLKVTKLAHGVPVG
GELDYLDDGTLAAAIRQRTGF