Protein Info for ABIE41_RS02740 in Bosea sp. OAE506

Annotation: DoxX family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 49 to 68 (20 residues), see Phobius details amino acids 74 to 92 (19 residues), see Phobius details amino acids 94 to 95 (2 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details PF07681: DoxX" amino acids 13 to 90 (78 residues), 53.8 bits, see alignment E=1.2e-18

Best Hits

KEGG orthology group: None (inferred from 63% identity to rlg:Rleg_3702)

Predicted SEED Role

"INTEGRAL MEMBRANE PROTEIN (Rhomboid family)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>ABIE41_RS02740 DoxX family protein (Bosea sp. OAE506)
MLASAQRFQPYALALLRIFTALSFISHGTQKLLAFPAAPSWGMPGAFSLPWIAGVLEIVG
GALVLVGFLTRPTAFLLSGLMAVAYWMAHGSKGFYPILNGGEAAMLFCFIFLYIFAAGPG
ALSVDGLRRRG