Protein Info for ABIE41_RS02720 in Bosea sp. OAE506

Annotation: double-strand break repair protein AddB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1035 TIGR02786: double-strand break repair protein AddB" amino acids 6 to 1023 (1018 residues), 954.9 bits, see alignment E=3.2e-291 PF12705: PDDEXK_1" amino acids 754 to 986 (233 residues), 80.4 bits, see alignment E=1.1e-26

Best Hits

Predicted SEED Role

"FIG041266: ATP-dependent nuclease subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1035 amino acids)

>ABIE41_RS02720 double-strand break repair protein AddB (Bosea sp. OAE506)
MAELNLFTIPAGAPFLDVLAQAMLEGRFGRVHDPKDPAALARVTLYLPTRRAARAFAACL
SDKLGGAPLLLPRILPLGDVDEAETALIGAGALAEDRIAPIDPLARRMILTRLVDAWGRS
ANRSHLRLDPSEPSLVPATLAEAYGLAGDLAALLDQMQTEDVAVERLGRLDAARFDRIWQ
LNAEFLSILGGAWPTILSERGACDPATFRNRMLAAERERLLSGAVTGPIIAAGSTGTVPA
TARLLAAIARLPNGAVVLPGLDLELPEEAWLAIAEEPAPSHPQAALHHLLDTLQAVRADV
RALAEHDAAHGARSRLLREAMLPASVTQSWADLRERLPAEEAELAFRDLRLVEAADEREE
ALAVAVALRETLETPGRQAALITPDRGLAERVTVELRRWDIAVDDSAGLPLARWPAGSLL
RLVLEAALAQMTPGSLVPLLAHPLCRLGLSREETARGASALEIGLWRGESVGRGLAGLYE
QLGRWSELCTARHAPGPRKRLSEDDAAAAATVLAALGTAFSPLLEALFLQAPSLAVMTAA
ARATVDAVSLNEDGQACAFRDADGEALAGLFDDLAAAQSDMPEGGRPADVVAILDGLLAE
RVVKRGGGGHPRVRIWGLLEARLLEADHVVLGGLNETVWPPQTTTDAFINRPMRAELGLS
PPERRVGQTAHDFSMALAAPCVTLTRARKAGESETIASRFWQRLQAVTPVPVWGEALAQG
KRLTALAGRLSAPAPVRPVGRPAPRPPRALQPLSLSVTDVETLYRDPYQIHARTILKLDA
LDGLVEDPSAQDRGSLLHEIVETFAATYPEQLPADAHGRLIAIGEQAFRRFADAPEVRAF
WWPRFLLTAGHFIAWEERRRGSLARIAVEVFTGHRFPLSDGQTLRLSGKADRVEITREPK
LRIIDFKTGAPPSKAQVEKGFAPQLTLEAELAARAGFEGAVGPTPVEAVLYMKLHHDPKA
WAKDKPLEFDGESLADVASRHLERLLAHVEALRSGREAFVSRRAPDYIKFASPYDHLARV
KEWAAASESDEGDGA