Protein Info for ABIE40_RS26465 in Rhizobium sp. OAE497

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 transmembrane" amino acids 32 to 52 (21 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details amino acids 128 to 145 (18 residues), see Phobius details amino acids 179 to 203 (25 residues), see Phobius details amino acids 233 to 258 (26 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 106 to 301 (196 residues), 54.2 bits, see alignment E=7.9e-19

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 88% identity to rlg:Rleg_4864)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalF" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (319 amino acids)

>ABIE40_RS26465 sugar ABC transporter permease (Rhizobium sp. OAE497)
MTILTGKAENTGRWHNRRSGVMRRVWDHRFDYAYVLPSIAVMLIVIAYPIYYTIELSFFN
TPPGLQLRDKIFVGIDNYTAILKSPVFWTVTKNTLIWTVGSTFISFLLGFACALALHRDF
AGRAIMRAILIIPWVISAVAASYIWKWIYHSDFGVIGAVLVGLGLADRPPNFIDNVDTVL
PSLIIVNIWREFPFAMIMMMAALQTVPDQLLRAAKVDGANAWQRFWHVTFPHVGNVSIVT
ILLLAVANFNSFIIPWIMTGGGPSNASHIWITHIYELAFGRQRWGVASAYSVLLFLILMS
FGYFYVRALSSNDKKEAAE