Protein Info for ABIE40_RS25185 in Rhizobium sp. OAE497

Annotation: sugar-binding transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF08281: Sigma70_r4_2
  • amino acids 16 to 47 (32 residues), 25.7 bits, 7e-10
• PF04198: Sugar-bind
  • amino acids 64 to 311 (248 residues), 178.6 bits, E=1.4e-56

Best Hits

KEGG orthology group: None (inferred from 86% identity to oan:Oant_4826)

Predicted SEED Role

"Putative DAK transcriptional regulator / Putative dihydroxyacetone kinase (EC 2.7.1.29), dihydroxyacetone binding subunit" in subsystem Dihydroxyacetone kinases (EC 2.7.1.29)

MetaCyc Pathways

• formaldehyde assimilation III (dihydroxyacetone cycle) (10/12 steps found)
• glycerol degradation II (1/2 steps found)
• glycerol degradation to butanol (10/16 steps found)
• superpathway of glycerol degradation to 1,3-propanediol (1/4 steps found)

KEGG Metabolic Maps

• Glycerolipid metabolism

Isozymes

Compare fitness of predicted isozymes for: 2.7.1.29

Use Curated BLAST to search for 2.7.1.29

Protein Sequence (325 amino acids)

>ABIE40_RS25185 sugar-binding transcriptional regulator (Rhizobium sp. OAE497)
MPVRSTDPIIHKAAWLYYTHGLRQDEVAQRLEISRASIATYLRRAREMGIVTITTSSELF
TDDVLARELEDAVGLNTVWIVPEDRQAMNAEAEMPVVAASVFLELINKGDRIGVAWGRTV
YHIADVMPFADLRGVTVVQLCGNLGAPYSYRPDQCTTEIARRLNAEGINLYAPLVLSSER
LAEELRAEPVIREQLATISDCDLALYSVGGIEKDSHLVKCGALSAGEMDEMGAKGAAGVI
AGQLIDRDGRWMDCSHNRRCMSADLTSIRSIKKRMLVVQEDNKFESLVAALKGGFASHLI
VTTSMARRVLEHWSREGLGKGSGTP