Protein Info for ABIE40_RS24015 in Rhizobium sp. OAE497

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 82 to 109 (28 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 142 to 159 (18 residues), see Phobius details amino acids 201 to 225 (25 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 98 to 278 (181 residues), 128.2 bits, see alignment E=1.5e-41

Best Hits

Swiss-Prot: 44% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 68% identity to bcs:BCAN_B1103)

MetaCyc: 38% identical to nickel ABC transporter membrane subunit NikC (Escherichia coli K-12 substr. MG1655)
7.2.2.i [EC: 7.2.2.i]; 7.2.2.- [EC: 7.2.2.i]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.i

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (280 amino acids)

>ABIE40_RS24015 ABC transporter permease (Rhizobium sp. OAE497)
MSLSISTSTQRFSVITTRPVLTIGLAIVFFWVFVALTIDIWSVYDPLKIVGRKLLEPSLQ
HWLGTDALGRDVLTRTLYGARYSIAISVVVVVCSVAIGSVLGAIAGFFGGWVDGLIMRLV
DVTLAFPPVLLAMAVAASLGPGLQNAAIAVIAVWWPVYARLMRGQVLDVISRDHIEAARA
SGATSFRLLTKHILPLSWTPTIISATMDFGQVVLLAASLSFIGLGAQPPSPEWGAMISDG
AAHFYSWWVAFGPGIAILSLGLGFNFIGDALRDILDPREH