Protein Info for ABIE40_RS21875 in Rhizobium sp. OAE497

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 27 to 51 (25 residues), see Phobius details amino acids 87 to 109 (23 residues), see Phobius details amino acids 121 to 142 (22 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details amino acids 275 to 297 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 100 to 302 (203 residues), 71 bits, see alignment E=5.6e-24

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 86% identity to rlg:Rleg_5199)

Predicted SEED Role

"ABC-type sugar transport systems, permease components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>ABIE40_RS21875 sugar ABC transporter permease (Rhizobium sp. OAE497)
MAAVSMETARSDSAAKNGGKLRLAPNYWPFVIPALVVIAAVIVFPWVFTLWMSVNSWTLG
QPVVFAGLDNYVRLFTDFRFWESLWHTALYTLLAVVAPLFFGTLAALIFDAQFPLRGFLR
GIFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLVGIGPQEWIYNQTSVIPSLVLVETW
QWTPLIMLIVLGGLAAVPREPFESAEIDGANAWQKFRYLTLPMIAPFLMIGVIIRSIDAV
KSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYASAMAVIFFVIIVALSFVLMMVR
QRANWSDVETR