Protein Info for ABIE40_RS18900 in Rhizobium sp. OAE497

Annotation: GNAT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 PF13302: Acetyltransf_3" amino acids 41 to 180 (140 residues), 110.8 bits, see alignment E=1.4e-35 PF13420: Acetyltransf_4" amino acids 45 to 183 (139 residues), 26.8 bits, see alignment E=7.4e-10 PF00583: Acetyltransf_1" amino acids 97 to 179 (83 residues), 36.2 bits, see alignment E=1e-12

Best Hits

KEGG orthology group: None (inferred from 92% identity to ret:RHE_CH04064)

Predicted SEED Role

"50S ribosomal protein acetyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>ABIE40_RS18900 GNAT family protein (Rhizobium sp. OAE497)
MQGELIRVDQSRSTREDQRSPKERLRPERLRTDCPVLLSERLVMRAPHEEDIDALSHLAN
NAKVATMVSRMPHPYTANDAADFVRRTKNGEIGKCVYAITKAENGAFIGCCGVEPHADGR
TVEIGYWLGEPFWGQGYTTEACHALVDMVFRTRENIDQIDARCRVMNIASRRVIQKCGFQ
FQGSGLAASLALGSNVPVEWYRLDRKTWMSLRSWGALS