Protein Info for ABIE40_RS17150 in Rhizobium sp. OAE497

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 74 to 99 (26 residues), see Phobius details amino acids 111 to 133 (23 residues), see Phobius details amino acids 161 to 185 (25 residues), see Phobius details amino acids 216 to 240 (25 residues), see Phobius details amino acids 266 to 288 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 91 to 287 (197 residues), 70.4 bits, see alignment E=8.4e-24

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 91% identity to rle:RL4244)

Predicted SEED Role

"putative transmembrane component of ABC transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>ABIE40_RS17150 sugar ABC transporter permease (Rhizobium sp. OAE497)
MIRNSHERRAERQLLIILLPSLVLLLAFVIYPALYSLYLSFTNEALTGAAALRPRFVGLR
NYARLFNDAKFWNSLLITFFFVMGSAIIGQFVLGLVSAMALRREIRFRRIFSSIILLPNA
APEVVAGFMWISMLAGGEHATLSRIVSFFGITPADWLNTFPLAMIIIVNTWRGIATAMIL
LTAGLSTIPNEIYEAARMDGATPSQMFRRITLPLMMPTILLYMLISAVSTIAVFGLVYAL
TRGGPGGATELVSIYIYNQSFTAFQLGYGAAVAVVALVISLILGIAYVRAMKVEI