Protein Info for ABIE40_RS10480 in Rhizobium sp. OAE497

Annotation: LTA synthase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 642 signal peptide" amino acids 1 to 50 (50 residues), see Phobius details transmembrane" amino acids 73 to 90 (18 residues), see Phobius details amino acids 97 to 113 (17 residues), see Phobius details amino acids 146 to 169 (24 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details PF00884: Sulfatase" amino acids 271 to 562 (292 residues), 178.6 bits, see alignment E=9.5e-57

Best Hits

Swiss-Prot: 61% identical to CGMA_RHIME: Putative cyclic beta-1,2-glucan modification protein (cgmA) from Rhizobium meliloti (strain 1021)

KEGG orthology group: None (inferred from 72% identity to ara:Arad_2677)

Predicted SEED Role

"Cyclic beta-1,2-glucan modification transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (642 amino acids)

>ABIE40_RS10480 LTA synthase family protein (Rhizobium sp. OAE497)
MIASVMKSAQARRMALLSTGLGSNVRSPAARGVLSVALTLSIALLSVIAVEWIARSTLAD
VGDFLTSTARPGMTTVAMLTILMLTLDAAFGRRHQSALIVVPLVLIPAFVSNQKQHYLSD
PFYPSDVLFARQIMELLPVMVRDRPFTAVALVIGIALLAAGIVFGWRYAWRTFPKLSGQA
RLRRLCLGLPVIAAFGSLMDYSQYSYIRDRLQVVPMMWDQKENYRSNGFILAFIFNVPMA
DVAAPAGLNTEALDAIPARNYGYLAGPREKPDVIMLMSESFWDPTRLKNLNFSADPMPTI
RAAQSGYVFSPEFGGMTANVEFEALTGFSNAFLPYGSIPYQQYIRRDIPSLATFFRGEGY
AARALHPFSGWFWNRNEVYKDFGFEEFRTEETLPPMEKRGIFASDDSLMKEIMREGDGLD
KPFFFFAVTLQGHGPYEANRYAHNSIDIQGNIPEADRATLATYTQGVKEADDSLKMLMDW
ASHRDRETIIVLWGDHLPPLGNVYMSAGYMPDQVATRKAPLDVMKQQHETPLVIWSSKKG
VKQDVGTISPSLISYNLLKFAGFEHPYYTGFLGRVQKKYDIIDRYQLATRKNEVTPDWVL
DPKKLDPLVRDYRYLQHDVMFGKAQTLDRFFPQHVMVNEASY