Protein Info for ABIE40_RS03820 in Rhizobium sp. OAE497

Annotation: DUF1217 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 PF06748: DUF1217" amino acids 61 to 173 (113 residues), 85.2 bits, see alignment E=2.8e-28 amino acids 171 to 290 (120 residues), 59 bits, see alignment E=3.3e-20 amino acids 626 to 695 (70 residues), 36.6 bits, see alignment 2.5e-13 amino acids 752 to 904 (153 residues), 168.8 bits, see alignment E=4.9e-54

Best Hits

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (943 amino acids)

>ABIE40_RS03820 DUF1217 domain-containing protein (Rhizobium sp. OAE497)
MISSSVAYAMLSKDMKTSLDRVSSQATVKQNADYYAENINKVKDVDDFLGNYKLYSYAMT
AYGLSDMTYAKAFMKKVLESDLTDPNSFANKLADSRYKTFAAAYNFHTPAPQAQTSAQED
DTIGLYTSSYEDSGQDTAAESNYFKSAMRDVDNVTDLVADPRLKAFVLTTFGIDGTYVSS
SFLKSVLTSDVNDPNSFVNTQANAKYQDMAKYFNFAADGTTGGTPPQPPQSAAQQADLVD
RANANGKDYFASTIGTVANVDDLLSDQKLNNFVRVVYNVSNTVSDADLKTYLTDPATAAS
SGYKTLNSAFGFNADGSVSGSAQTADQTAATTARFDQSTAYYKRIMETVTGADDIVADPA
LSSYVKIAFGVPLTMSDDDVTKMLTDPTFAASVGAPDAPSDFNFNADGSMVGSAQTTDQK
NGIVEKYTLNSLQKVVDYDDVPGEPDDVYYVTPAAADFNKAYFEKTIKTITSVDQLMADD
RLTSYIKAAYSLGKHGYGSGLVDGLDNTGLRQVLVNGGLATQLGLKDLHDAFNFNADGTV
TSPDGAQSAANTAQVSKQYMARYDDEAKDFIDDITSNYKKLITSSVGTGTFSDIKDINDF
LRDNKQIDFDKKNDDLPDLYHVALQAYGLTEADLPKSMARKVLTSDAYDPKGYVASLKDD
RITNFARAFNFGADGKIGPSLAPLSDASMAKYATNYKSHATMYMADGPLKDKASKDATTD
VDNFAKGMADVKSLDDFLGNSKLTDFILKSVGLDPKDYDKDTLKKIFTSDPEDKKSYLNT
KADSKFKDIVADFNFDKDGNMTRSKLGTVQDAGALDRTQSAYVAQQLETQQGQSNDGTRL
ALYFARQAPNITSLYTILGDKALFQVVQTAFSLPTQMSSMDVDKQVSMLQKFIDLKDLGD
PTKVDKLVKRFTAMYDIQNSTTQAPALQILTNGGTTKAAGILG