Protein Info for ABIE40_RS03085 in Rhizobium sp. OAE497

Annotation: flagellar hook-associated family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00669: Flagellin_N" amino acids 6 to 142 (137 residues), 45.2 bits, see alignment E=1e-15 PF00700: Flagellin_C" amino acids 291 to 374 (84 residues), 61.4 bits, see alignment E=8.7e-21

Best Hits

Predicted SEED Role

"Flagellar hook-associated protein FlgL" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>ABIE40_RS03085 flagellar hook-associated family protein (Rhizobium sp. OAE497)
MKSSFISSSAIQNAMRLTIRQSQNQMVQSAVEASTKMYADVGVALGVNTAKSIDFNREID
RIKSIKDSNSVVNLRLEMSQNGLGDLNSSADDLMAKLTALKGSESATTISVTLQQASSAF
STLMGTANSSANGEYLFSGVNTDVPPLTDQSSAAISAMQTNLQAYASGLTNPVTGNPKTV
ADLDETDMKNFMTTFVEPMFTGDTLPAGYPVGAPVPTSGAYVTNPPAWGDWSSASNQNMT
SRISNSEVVTSSTNANSDGMRYFAMATIMTQALAGQGLGTAGMAGLSDGAIDYAGRAVDG
LTGQQSQLGLSQERVTKSNDALDAQSTILQGKLIDLTGVDPVEATTIVKNMETQLQTSYT
IISKIQQLSLVNYL