Protein Info for ABIE40_RS03080 in Rhizobium sp. OAE497

Annotation: flagellar hook-associated protein FlgK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 514 TIGR02492: flagellar hook-associated protein FlgK" amino acids 5 to 511 (507 residues), 286.8 bits, see alignment E=2e-89 PF06429: Flg_bbr_C" amino acids 461 to 511 (51 residues), 38 bits, see alignment 6.9e-14

Best Hits

Predicted SEED Role

"Flagellar hook-associated protein FlgK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (514 amino acids)

>ABIE40_RS03080 flagellar hook-associated protein FlgK (Rhizobium sp. OAE497)
MSLTSALNTAQSIFNNTGTQSAIVSGNIANAGNKDYVRRQAMISTSLDGASVVKIDRAQE
DALLRQYLASNSQDSAQQTLLNGLEDVKSILGGNDYETSPSSYLAAFQQKLGAFQTSPNN
AVAAQGAISAAQDLANSLNNATASVQNTRAAADKSIATQVDTLNSLLSQFETANNAVKNA
VNTNSDPSDALDQRDKLLKQISSIVSVNPVSRSGNDMALYTADGVVLFDTVPRSVQFTPT
PTYQASDKGNGVYIDGVALAMGQGGTTSGQGSLQALLQIRDDVAPKFQNQLDEIAKGLIN
MFAETNSDGSSTKPGLFTWTDSTGAVGGMPPIDTTTNPATSPIISGLAGSIKVSSAVITS
QGGDPMKLRDGSINDPVPAPTTPPYFNTNPTGNGGYTAQLDKYYNAMSAKVDFDPGTGVV
GFNTGSGIDSNVSIMDFAANSVGWLEQYRSSASDASENTSAALSRSDQAYSNETGVNLDE
ELTLMLDIEQSYKAATKILNAVDEMLKSLLDIAS