Protein Info for ABIE40_RS03005 in Rhizobium sp. OAE497

Annotation: flagellar basal body L-ring protein FlgH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02107: FlgH" amino acids 60 to 237 (178 residues), 185.9 bits, see alignment E=2.4e-59

Best Hits

Swiss-Prot: 75% identical to FLGH_AGRFC: Flagellar L-ring protein (flgH) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02393, flagellar L-ring protein precursor FlgH (inferred from 90% identity to rlg:Rleg_0356)

Predicted SEED Role

"Flagellar L-ring protein FlgH" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>ABIE40_RS03005 flagellar basal body L-ring protein FlgH (Rhizobium sp. OAE497)
MNKRFPAAIAAVALLAGCQSPQSVREIGRAPAMSPIGSGLAYGQTPQMALYPKQPRQVAQ
GYSLWSDSQAALFKDARALNVGDILTVNIQINDKASFENDTSRSRTNSSGMNWDVQANIL
GWNPKSKTDLTYGSDTSTDGKGKIDRSEKLTLLVAAVVTGILENGNLVISGSQEVRVNQE
IRILNVAGIVRPQDVNAENQISYEKIAEARISYGGRGRLMEVQQPPRGQQAVDLFSPL