Protein Info for ABID97_RS28390 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 40 to 58 (19 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 108 to 127 (20 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 165 to 191 (27 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 245 to 268 (24 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 309 to 326 (18 residues), see Phobius details amino acids 332 to 355 (24 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details amino acids 396 to 415 (20 residues), see Phobius details PF07690: MFS_1" amino acids 47 to 359 (313 residues), 106.4 bits, see alignment E=1.6e-34 amino acids 249 to 423 (175 residues), 40.6 bits, see alignment E=1.6e-14 PF06779: MFS_4" amino acids 104 to 415 (312 residues), 35.7 bits, see alignment E=6.5e-13

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_4300)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (436 amino acids)

>ABID97_RS28390 MFS transporter (Variovorax sp. OAS795)
MLKTNSSFVQPDLALPLRLKHLHMTASPHSPSELRQHWRYVLGCFLGLASGVSSLYFYSS
GLFLKPLAAEFGWTRGTASLGSLISSVLLGCAAPFIGQVIDRYGARRVTLLSLVGLSTSF
LLLGAWTQGLASFLALVTVLTLLGGATSPLSFTRILVGKFSRQRGLALGIAITGTGVGAI
LIPLIVTPAIAHFGWRATYLGLAAVVLALLPLIAYFLRGVDATPAEKIRSAQSASNLKAL
ADPRFIRIAAVFLLCSVGIFGTIVHVVPMLTDLGLSPNRAAGLASILGVAVIVGRIVTGL
LLDMFDAARLSATLFVLSATGMLLLATGRPALVLPGLLMTGFAVGAEFDLAAYLVSRKFA
LDLYSTLFGGVYATVAIGAGIGPFIAGRLFDISGSYISWLCLAAGLLLAAAMICLTERPA
AKHASGTDAATGASER