Protein Info for ABID97_RS28025 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 589 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 58 to 78 (21 residues), see Phobius details amino acids 84 to 107 (24 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 156 to 175 (20 residues), see Phobius details amino acids 210 to 233 (24 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 300 (269 residues), 100.6 bits, see alignment E=8.6e-33 PF00005: ABC_tran" amino acids 365 to 511 (147 residues), 89.1 bits, see alignment E=4.5e-29

Best Hits

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (589 amino acids)

>ABID97_RS28025 branched-chain amino acid ABC transporter ATP-binding protein/permease (Variovorax sp. OAS795)
MALSPRHARAAAAAAVAGLVALPFTGVADFYLSYLYVVFFWIALASSWGILSGYSGYWSF
GHAAFFGTGAYTTATLAGKWGVPFLLTIPAAAGIAATLALGIGWVVFRINTLRAEFFALL
TLSVTYVLAAVISNTPIDGGGGVYLSNVSIPQLGTTVPGAIYLLGLVLALTALAVSRRIL
RSRLGAGLLAIHDDEDVAEVKGVPTLHYKLAAFAISSAIAGAAGAIQAAYVGYVTVGETF
SITVPLYVVLMSILGGARHWAGPAIGAALITVALSLFVGGGHAELGRAGVALALVVVILV
LPEGIAPSLFGRFAPRRNAAPVSAPALVSASEPGNVVVMKPQATTARPLLTCRAVAKSFG
GIRALQGVDLQVEEGEILALVGPNGSGKSTLINMISGHFPLSSGSIELHGASIGGLAPHE
VARRGIARTYQIPRLFNHLTVLENVRLCAFFGGTQDAGSESPDDLARRWLAFTGLEAKAD
VLPPALNLHERKFVELARALAAQPRLLLLDEVLCGLTPTEVDHAIAMIRKIRADGTTIVF
VEHLMRAVVALADRIAVLDQGTLLALGLPRETMQDPRVVGAYLGTAHAA