Protein Info for ABID97_RS27715 in Variovorax sp. OAS795

Annotation: GntR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 PF00392: GntR" amino acids 17 to 80 (64 residues), 74.6 bits, see alignment E=4e-25 PF07702: UTRA" amino acids 102 to 241 (140 residues), 128.2 bits, see alignment E=2.1e-41

Best Hits

KEGG orthology group: K03710, GntR family transcriptional regulator (inferred from 93% identity to vpe:Varpa_2480)

Predicted SEED Role

"Putative alkanesulfonate metabolism utilization regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (257 amino acids)

>ABID97_RS27715 GntR family transcriptional regulator (Variovorax sp. OAS795)
MSTARALEPIAFSPVPLYTQVREALRERILDGSYAPHAQLPSESEMVALFKVSRITVRQA
LSDLQRENLIFKIPGKGTFVAKPKAFQHLGQLEGFAEAMVRMGYEIRNQVTSHKTVPASP
RVAQQLGLAEGVPVAQIKRVRHLNRAPVSYEVTYLPHAIGERLRQADLAGRDIFLILEND
HGIALGHADLQIDAMLADEVLSRALEVPEGTAVLRVERLTHTADGAPLDFEDLYFRGDAF
QHRLRIARANPTPKAHP