Protein Info for ABID97_RS26770 in Variovorax sp. OAS795

Annotation: urea ABC transporter ATP-binding subunit UrtE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 229 TIGR03410: urea ABC transporter, ATP-binding protein UrtE" amino acids 2 to 229 (228 residues), 320.4 bits, see alignment E=3.1e-100 PF00005: ABC_tran" amino acids 18 to 158 (141 residues), 110.8 bits, see alignment E=1.3e-35 PF13304: AAA_21" amino acids 130 to 185 (56 residues), 28 bits, see alignment E=3.3e-10

Best Hits

Swiss-Prot: 35% identical to LIVF_ARCFU: Probable branched-chain amino acid transport ATP-binding protein LivF (livF) from Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 72% identity to axy:AXYL_00357)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (229 amino acids)

>ABID97_RS26770 urea ABC transporter ATP-binding subunit UrtE (Variovorax sp. OAS795)
MLEVSHLNVFYGESQAIRDVSFGVGRCESVAIMGRNGMGKTTLLKSLIGMLPSRSGSIRI
DAQELAGTPSHTRVRKGLAFVPQGRMIFSQLTVEENILVGMHAAARAPVPEYIYRFFPVL
AEMKSRRGGNLSGGQQQMLAIARALVTDPSVLILDEPTEGIQPSIIKDIARTLNVLRAER
QIAIVVSEQVLSFALDLADRFLVIDGGRIVHDEARAHLDQDKVKSFLTI