Protein Info for ABID97_RS25010 in Variovorax sp. OAS795

Annotation: septal ring lytic transglycosylase RlpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 194 PF03330: DPBB_1" amino acids 68 to 155 (88 residues), 85.3 bits, see alignment E=1.4e-28 TIGR00413: rare lipoprotein A" amino acids 70 to 163 (94 residues), 140.7 bits, see alignment E=3.2e-45

Best Hits

KEGG orthology group: K03642, rare lipoprotein A (inferred from 85% identity to vap:Vapar_4680)

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (194 amino acids)

>ABID97_RS25010 septal ring lytic transglycosylase RlpA family protein (Variovorax sp. OAS795)
MPPATEGGPPDKEDAKLLPLARQLAVPPGAPARSNVPSVRYDLAVSGTGELGPDDGVPGD
GPREIFERGGASWYGIPFHQRKTASGERFDMMALTAAHKTLPFNTRVCVRSLVNGSEVLV
RITDRGPYAQGRIIDLSRAAAERIGLIGLGIKQVALTIVDHEGMRCGGAEVEVAEAPAPA
PAAPKAAAPQRRRR