Protein Info for ABID97_RS24995 in Variovorax sp. OAS795

Annotation: serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF13365: Trypsin_2" amino acids 60 to 188 (129 residues), 103.3 bits, see alignment E=2.1e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>ABID97_RS24995 serine protease (Variovorax sp. OAS795)
MKAGSMNPAPWLRPAAAFLAIASAAGSAAALEPDVLFAKLSDSVWAVRTFDAQERPLRAG
SAVVIAPGRLVTNCHVLAKASNFVVKRDNVTYGATLEYPDPARDLCQIRVANFTAPPVTL
APAGGARVGQRVYAIGNPRGLENTLGEGLLSGLRGGDGEARLLQTTAAVTPGSSGGGLFD
SDGRLLGITTFAARDGGSLNFAIPAEFLAELPARAQAQLAARAREPEGGARRSADLGGIG
LNEPLRVGDALEYVRTDRLTGNRTPVVYRLERVAGDELSFNAGSRVEKANGQVVSITSPI
GGVFDSASPPGGWAPKDEIRSGMRWHLDYVTTTGDRLRHELDATVGAEHTTRVDGVELNV
LRISYQGWIYASYGTGASLVGTPFNVAALYSPELRRIVKFEATHRRASASITNESLELVR
IQR