Protein Info for ABID97_RS23235 in Variovorax sp. OAS795

Annotation: SAM-dependent methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 PF13679: Methyltransf_32" amino acids 55 to 195 (141 residues), 167.5 bits, see alignment E=1.8e-53 PF13847: Methyltransf_31" amino acids 82 to 178 (97 residues), 43.2 bits, see alignment E=3.5e-15

Best Hits

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_1150)

Predicted SEED Role

"SAM-dependent methyltransferases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>ABID97_RS23235 SAM-dependent methyltransferase (Variovorax sp. OAS795)
MNAQATRAVKTAKTSKTSKAEAELAEVLRPGQSIELLKELHILTREGRLNQDSRRKLKQV
YHLFQFIEQLLRELPGGGAEATLADHGAGKSYLGFIIYDLFFRAREGGHVYGIETRSELV
EKSRALARQLGFDRMSFLNLTVAESAQAEELPERIDVVTALHACDTATDDAIAFGLAKKA
RCMVLVPCCQAEVAACLRETKALALSRTPLAELWRHPLHTREIGSQLTNVLRCLYLEAHG
YSVTVTELVGWEHSMKNELILARHTGQRKAAAAARLGELLAQFGLDALGDTRFRLP