Protein Info for ABID97_RS19995 in Variovorax sp. OAS795

Annotation: transglutaminase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1181 PF08379: Bact_transglu_N" amino acids 7 to 84 (78 residues), 86.2 bits, see alignment 3e-28 PF01841: Transglut_core" amino acids 131 to 246 (116 residues), 58.6 bits, see alignment E=1.1e-19 PF09899: DUF2126" amino acids 277 to 1180 (904 residues), 1328.4 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1181 amino acids)

>ABID97_RS19995 transglutaminase family protein (Variovorax sp. OAS795)
MSIHAALHHVTHYKYDRLVQLGPQVVRLRPAPHCRSKIISYSLQVEPTEHFVNWMQDPFA
NYQARLVFPEKTREFKVTVDLVVEMAVYNPFDFFLEPQAENFPFKYTASQAEELAPYLVT
EEATPLLSAYLDKIERKEQRTIDFLVGLNQQVQQDVNYLIRMEPGVQTPEETLTNGSGSC
RDSGWLLVQLLRHCGLAARFVSGYLIQLTPDVKALDGPSGTTVDFTDLHAWCEVFLPGAG
WVGLDATSGLMAGEGHIPLACTPTPSSAAPIEGGVDDSEVEFGHEMKVTRIYESPRVTKP
YTEEQWAEVLALGDAVDARLKAGDVRLTMGGEPTYVATSDRDAPEWNTDALGPTKRGYAT
ELVHKLRAEYGRGGFLHFGQGKWYPGEQLPRWALSIFWRADGQTLWHNPDLFADERVPTH
YTSEDARRFTTVLAHKLGITERYAQAGYEDVYYYLWRERRLPVNVDPFESKLDDELERVR
LRRVFTQKLDAVIGYMLPLEPANADVDAPALEGPGWKTGPWFLRDDRLYLIPGDSPMGYR
LPLDSQPWASKGDYPYLVERDPTAPRTALPSSADYRARYAVPADGAMGADLGAVPYEFGA
PPVVPASLRMQAPGGAANAADATAAGDGKGKPSPADAADSAATPATRQPLRGESAHWVTR
TALCVEVRDPRRANGPAAEKKGSASGVLYVFMPPLARLEDYLDLVAAVEATAQQLGMRIV
MEGYPPPRDPRLKMLAVTPDPGVIEVNIHPAHDWKELVDHTEFLYNAAFETRLSAEKFMT
DGRHTGTGGGNHFVMGGATPADSPFLRRPELLASLLLYWHNHPSLSYLFSGMFIGPTSQA
PRVDEARNDQVYELEIALKEIAKSREIHGQNMPAWLVDRTLRNILIDVSGNTHRSEFCID
KLYSPDSSTGRLGLLELRAFEMPPHARMSIAQQLLIRALVARFWDDPYKAPVTRWGTELH
DRFLLPTFVKMDFDDVISEMRQAGFAFDIDWFAPHFEFRFPLVGQVQAMGVELSLRNALE
PWHVMGEEGSAGGTVRYVDSSLERIEVRVTGLNESRHVITVNGKVLPLQPTGTVGEFVAG
VRYKAWNPPSALHPSIDAHAPLTFDIVDTWMKRSLGGCQYFVAHPGGRNYDTFPVNAYEA
ESRRMSRFTEMGHTPGLMRTPPATIELAGSREFPFTLDLRR