Protein Info for ABID97_RS19945 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 PF00005: ABC_tran" amino acids 27 to 167 (141 residues), 81.5 bits, see alignment E=9.2e-27 PF08402: TOBE_2" amino acids 277 to 343 (67 residues), 38.3 bits, see alignment E=1.2e-13

Best Hits

Swiss-Prot: 38% identical to UGPC_PARDP: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Paracoccus denitrificans (strain Pd 1222)

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 97% identity to vap:Vapar_3395)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>ABID97_RS19945 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MARIDLDLAHAYRPNPTQDSDYALLPLQMSFRDGGAYALLGPSGCGKTTMLNIISGLLVP
SQGMVKFDGRDMTRATPQERNIAQVFQFPVIYDTMTVAENLAFPLRNRKVPEDQIRKRVG
EIAEMLDMSGQLNQRAAGLAADAKQKISLGRGLVRSDVSAVLFDEPLTVIDPHLKWQLRR
KLKQIHRELKLTLIYVTHDQVEALTFAEEVVVMTRGKAVQVGSAEALFERPAHTFVGHFI
GSPGMNFLSAKNANGALEVAGTPLVPTRELPQGALKIGIRPEYLRLSNAGAAGAVPALVR
QVQDVGTHAMLSAEVDGGVVKVRLHSEDQPPGVGDTVWLRVLDTHTCYYKDEELVA