Protein Info for ABID97_RS19455 in Variovorax sp. OAS795

Annotation: VOC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF00903: Glyoxalase" amino acids 5 to 121 (117 residues), 36.7 bits, see alignment E=2.5e-13

Best Hits

Swiss-Prot: 57% identical to VIR17_SALTY: Virulence protein STM3117 (STM3117) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 90% identity to vap:Vapar_3266)

Predicted SEED Role

"biphenyl-2,3-diol 1,2-dioxygenase III-related protein" in subsystem Biphenyl Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>ABID97_RS19455 VOC family protein (Variovorax sp. OAS795)
MIGHLDHLVLTTTDEEACVRFYTGVMGMALETFGPGRKAFRFGSQKINLHVKGAEFEPKA
QLPTPGSLDLCFIASVPLEDVIARLHDKGVPILEGPVMRTGATSRIRSVYVRDPDLNLIE
ISELAA