Protein Info for ABID97_RS18645 in Variovorax sp. OAS795

Annotation: aromatic ring-hydroxylating dioxygenase subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 429 PF00355: Rieske" amino acids 51 to 134 (84 residues), 68.2 bits, see alignment E=4.8e-23 PF00848: Ring_hydroxyl_A" amino acids 201 to 426 (226 residues), 48.5 bits, see alignment E=1e-16

Best Hits

KEGG orthology group: None (inferred from 62% identity to bbr:BB3148)

Predicted SEED Role

"putative dioxygenase hydroxylase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (429 amino acids)

>ABID97_RS18645 aromatic ring-hydroxylating dioxygenase subunit alpha (Variovorax sp. OAS795)
MSTCASVIPITNANPEPRAWGDLVRENQVHGSLYTDPTIFQEELRKIWFRTWVYVGHESE
VPKPNDYVMKSIGPEPILMTRDREGRIHLLHNRCPHRGNRVCMTEKGSARSFTCPYHGWT
FTNDGALRGYPFPSGYEGVDRSELGLGKVARVASYKGFVFGSMAQEGPSLEEHLGAAMQA
IDALCLTSPEGEVEVTAGFLKHKVKSNWKFLVENETDGYHPSFVHASIFEVAKSGIGSLY
SSDSTAVSRYFGQGHSENDLRPEFRKRDVPMSWFNTTADRLPEYTRSMEAAYGVEQARKI
MIDGTPHIMIYPNLFIAEIQIFVIQPLAFNESVQHVTALQFKGAPDLNRRLRQQTMGSVG
PAGFLLADDAEMYERTQLGVQAKSPEWLYLGRGKHRERTDENGYLIGDATDETPTRGIWR
HYRSLMEAA