Protein Info for ABID97_RS17880 in Variovorax sp. OAS795

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1271 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF05359: DUF748" amino acids 5 to 349 (345 residues), 278.8 bits, see alignment E=1.6e-86 amino acids 474 to 1246 (773 residues), 608 bits, see alignment E=6.1e-186 PF13116: YhdP" amino acids 16 to 268 (253 residues), 47.5 bits, see alignment E=1.1e-16 PF05170: AsmA" amino acids 18 to 183 (166 residues), 32 bits, see alignment E=8.8e-12

Best Hits

KEGG orthology group: None (inferred from 88% identity to vap:Vapar_3097)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1271 amino acids)

>ABID97_RS17880 DUF748 domain-containing protein (Variovorax sp. OAS795)
MDAASLRQNKWVRRGVVAVLALLALWIVAWLAVPPIAKSQLQKIASDKLGRQVTVGKIDF
KPWTLELALHDLRIATADGSRPQVAIKRIYADAELQSLVRLAPVIDAVTIDSPAILLTHL
ADGKYDIDDILARLAAAPPSDPNAEPARFAIYNISIKNGAVDFDDQTVKRKHELRDFALD
VPFLSNLASKRDINTEPKLAFALNGSKFDSAALTTPFAKSRKTDAHVQFKGLDLAPYLGY
MPGGLPAKLQAGSLDADLKIDFEQAATAGLRITGTVEAHGAKLVDPRGRDLLAFESLKLA
LADVRPLESVFRLSEVALANPQLAVARDAQGRLNLLATDPATGTAEKVAPPAPAASAPDG
KPPEKPKLRVQVDKIALSGGRIGWRDETVQPAAALEASALGLDLTGVTWPMEKPAQFSGS
TAIGGASLKFQGSATDKKADVQTEVDALPLSLAAPYLAHSLEPTLDGKLSGQIDIAWNQP
DLRFKARRLAADGLALTQAKTALASVGRFELVDAEVDMTKHTLDVASFTATNPKVNIERD
SEKRWMFERWLKAPAAGNGAAAQAKVAAPKPAGTGPEAAPPGANTKPWALTIGTLAVKDG
TLSYADKASAAPVAVEITALNVEAKKVAPGTTTASPLQVSGRIGSRRSEPGHFEYKGNLV
LKPLAAEGRLEVASFPAHAFKAYYGDALNVDIRRAFASYRGTVRYASAPAGMTLKLAGDT
AVDDFRANSISLTQSPGFDRNTNQLLSWKTLSLRGLQVSLAPNAAPAVDVRETTLTDFFA
RVIVDPTGRLNLLNLTKKGEAEANAAAAASTEAKTKRSLGGTNTTTRAPAARSGGAPVSA
ESMVGGGAEPAPPAPAPVATAQADADTGPKPVINFGPMSLVNGRIDFTDLFVKPNYSADL
SALTGKLSSFSSNPPKGESGRPAMADLELRGKAQQTAALEITGKLNPLVKPIELDITAKM
RDLDLAPLSPYSVRYAGHGIERGKMSMDVNYKVAPDGQLTATNKLVLNQLQFGEEVQGAP
NSLPVRLAVALLADRNGVIDVDLPLSGSLNDPQFSIGPLIFKAVINLIAKAATAPFNLLT
GGLGGGSSESSTITFDAGSSVLGASAKESLDKVVKALTDRPALQMTVVGTASLERERDAY
QRQRLRQLAQAEKRRMAVRGGQAGTDVPPVTDAEYPELLTAVYKRADVAKPRNMVGLAKD
LPVNEMENLLLAGIPVDEESIRQLAVERGAVVRDYLLAQKLPSERLFLGAVKTTASGADW
KPGAELKLATK