Protein Info for ABID97_RS16655 in Variovorax sp. OAS795

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 PF00005: ABC_tran" amino acids 17 to 186 (170 residues), 74.3 bits, see alignment E=4.7e-24 amino acids 345 to 484 (140 residues), 74.7 bits, see alignment E=3.6e-24 PF12848: ABC_tran_Xtn" amino acids 225 to 300 (76 residues), 99.5 bits, see alignment E=2.8e-32 PF16326: ABC_tran_CTD" amino acids 613 to 671 (59 residues), 35.4 bits, see alignment 3.1e-12

Best Hits

KEGG orthology group: K06158, ATP-binding cassette, sub-family F, member 3 (inferred from 91% identity to vpe:Varpa_2810)

Predicted SEED Role

"Glutathione-regulated potassium-efflux system ATP-binding protein" in subsystem Glutathione-regulated potassium-efflux system and associated functions or Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (679 amino acids)

>ABID97_RS16655 ATP-binding cassette domain-containing protein (Variovorax sp. OAS795)
MITLKNVILRRSAKVLLDGATVTINPGEKVGLVGRNGAGKSTLFALFNGSLHEDGGDFYV
PKQWRMAQVAQDMPETEESATDFVVGGDTRLAELRATLAAIEAAYEANPDDADIGMELAH
AYTDLADAGEHDAVPRAQALILGLGFKSHELDGPVNSFSGGWRMRLQLARALMCPSDLLL
LDEPTNHLDLDALVWLEAWLQKYAGTMIVISHDREFLDAVTDVTLHIANAQLTRYGGNYS
KFEDMRALQMEQQQVAFSKQQDKIAHLQKFIDRFKAKASKAKQAQSRVKALERMERVAPL
LAEADFTFEFKEPGNIPNPMLSISNASFGYKAPEGGEGDEPKTILRGVSRSVLAGQRIGI
LGANGQGKSTLVKTIAREMGALAGQVTEGKGLNIGYFAQQELDVLRPQDNPLEHMVRMAR
ELGSAVKESTGEQALRGFLGSFNFSGDMVKQPVGTMSGGEKARLVLAMMVWQRPNLLLLD
EPTNHLDLATREALAVALNEFEGTLMLVSHDRALLRSVCDEFWLVGRGVVADFDGDLDDY
QRYLLDEAKRLREEAKVAVRDAAAAVATAAAPVAVSAAAPAAGEPAAANRNPQQRKQDAQ
GRQQRSDQAKPLKREIAQVDERLAAAGTERTALEARLAQPLPPAEIAETGKRLKALNDEI
GRLEERWLALSDQLEALAA