Protein Info for ABID97_RS15875 in Variovorax sp. OAS795

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 95 to 120 (26 residues), see Phobius details amino acids 141 to 161 (21 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details PF04403: PqiA" amino acids 47 to 196 (150 residues), 153.6 bits, see alignment E=2e-49

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 92% identity to vap:Vapar_2895)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>ABID97_RS15875 paraquat-inducible protein A (Variovorax sp. OAS795)
MTEVPDTVVCPGCDAVFSRAPLQPREVSRCARCGTELYRHPGDQHRRILPLTVACLIMFA
IANLFPIVEIELQGLRSQTTLAGAVAVLSAEGMSIVALLVLATTLLFPLLQLCILAYLLV
PLQREHRPAGFAILVRAMQMLRPWGMIEVFLLGVLVAIVKLSSMATVVAGPALWAFVALT
VMLTAVLSFNPNAFWEMTFRPPGEPAEETA