Protein Info for ABID97_RS15495 in Variovorax sp. OAS795

Annotation: aliphatic sulfonate ABC transporter permease SsuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 125 to 143 (19 residues), see Phobius details amino acids 149 to 168 (20 residues), see Phobius details amino acids 189 to 206 (18 residues), see Phobius details amino acids 212 to 232 (21 residues), see Phobius details amino acids 244 to 263 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 101 to 269 (169 residues), 103.7 bits, see alignment E=5e-34

Best Hits

Swiss-Prot: 65% identical to SSUC_ECOLI: Putative aliphatic sulfonates transport permease protein SsuC (ssuC) from Escherichia coli (strain K12)

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 97% identity to vap:Vapar_2975)

MetaCyc: 65% identical to aliphatic sulfonate ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-56-RXN [EC: 7.6.2.14]

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.6.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (282 amino acids)

>ABID97_RS15495 aliphatic sulfonate ABC transporter permease SsuC (Variovorax sp. OAS795)
MTEQVQKLPAVAPSEENAGGAFKAFGASVAGRLVPWLVPVGLIVFWQVASSLGWLSTRVL
PAPVDVVKAAWGLAVSGELWTHVKVSAGRALAGLAIGGGTGLVLGLLTGSVKFFETLLDS
TIQMVRNIPALALIPLVILWFGIDESAKLFLISVSVFFPIYLNTFHGIRNVDPQLIEMGR
TYGLSRWQLYREVILPGALSSILVGLRFSLGLMWVILIVAETISAQAGIGYLTMNAREFL
QTDIVLVGILLYALLGKLADLFARGLEQWWLRWHPGYQKKPK